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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Nicolas Puillandre; Philippe Bouchet; Thomas F. Duda; S. Kauferstein; +4 Authors

    We present a large-scale molecular phylogeny that includes 320 of the 761 recognized valid species of the cone snails (Conus), one of the most diverse groups of marine molluscs, based on three mitochondrial genes (COI, 16S rDNA and 12S rDNA). This is the first phylogeny of the taxon to employ concatenated sequences of several genes, and it includes more than twice as many species as the last published molecular phylogeny of the entire group nearly a decade ago. Most of the numerous molecular phylogenies published during the last 15 years are limited to rather small fractions of its species diversity. Bayesian and maximum likelihood analyses are mostly congruent and confirm the presence of three previously reported highly divergent lineages among cone snails, and one identified here using molecular data. About 85% of the species cluster in the single Large Major Cade; the others are divided between the Small Major Cade (similar to 12%), the Conus califomicus lineage (one species), and a newly defined clade (similar to 3%). We also define several subclades within the Large and Small major clades, but most of their relationships remain poorly supported. To illustrate the usefulness of molecular phylogenies in addressing specific evolutionary questions, we analyse the evolution of the diet, the biogeography and the toxins of cone snails. All cone snails whose feeding biology is known inject venom into large prey animals and swallow them whole. Predation on polychaete worms is inferred as the ancestral state, and diet shifts to molluscs and fishes occurred rarely. The ancestor of cone snails probably originated from the Indo-Pacific; rather few colonisations of other biogeographic provinces have probably occurred. A new classification of the Conidae, based on the molecular phylogeny, is published in an accompanying paper.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Hyper Article en Lig...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Europe PubMed Central
    Other literature type . 2014
    Data sources: PubMed Central
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    Molecular Phylogenetics and Evolution
    Article . 2014 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Hyper Article en Lig...arrow_drop_down
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      Europe PubMed Central
      Other literature type . 2014
      Data sources: PubMed Central
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Molecular Phylogenetics and Evolution
      Article . 2014 . Peer-reviewed
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    Authors: Thierry de Ville d'Avray, Laure; Ami, Dominique; Chenuil, Anne; David, Romain; +1 Authors

    The understanding of ecosystem services is essential to support sustainable use and preservation of ecosystems. Coralligenous habitats, main contributors of the Med iterranean marine biod iversity, are yet und erstud ied in term of services provid ed. This stud y presents an original small-scale approach to investigate the services provided by coralligenous habitats of a French stud y area consisting of two marine sites (Marseille and Port-Cros sites) in order to cover two contrasted anthropogenic pressure despite the small-scale. Our results are based on the opinions of 43 experts who ranked 15 services in terms of existence and level of importance for human well-being: supporting ecological functions were consid ered the most important, then provisioning and cultural services. Regulating services were consid ered uncertain d ue to a lack of knowled ge. The small-scale approach highlighted a need for a referential frame to determine the existence of services (e.g. geographical and temporal scales, benefits and beneficiaries levels). International audience

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ HAL AMU; Mémoires en...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Marine Pollution Bulletin
    Article . 2019 . Peer-reviewed
    License: Elsevier TDM
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Cuif, J.P.; Ball, A.D.; Dauphin, Y.; Farre, B.; +4 Authors

    AbstractA series of Polynesian pearls has been investigated with particular attention to the structural and compositional patterns of the early developmental stages of the pearl layer. These initial steps in pearl formation bear witness of the metabolic changes that have occurred during the pearl-sac formation. The resulting structurally and biochemically complex structures have been investigated using a variety of techniques that provide us with information concerning both mineral phases and the organic components. Results are discussed with respect to our understanding of the biomineralization mechanisms, as well as for the grafting process.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ CORE (RIOXX-UK Aggre...arrow_drop_down
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Microscopy and Microanalysis
    Article . 2008 . Peer-reviewed
    License: Cambridge Core User Agreement
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    Hal-Diderot
    Article . 2008
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ CORE (RIOXX-UK Aggre...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Microscopy and Microanalysis
      Article . 2008 . Peer-reviewed
      License: Cambridge Core User Agreement
      Data sources: Crossref
      Hal-Diderot
      Article . 2008
      Data sources: Hal-Diderot
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    Authors: Rodríguez-Quilón, I.; Santos Del Blanco, Luis; Grivet Delphine, Delphine; Jaramillo-Correa, J. P.; +4 Authors

    Heterozygosity–fitness correlations (HFCs) have been used to understand the complex interactions between inbreeding, genetic diversity and evolution. Although frequently reported for decades, evidence for HFCswas often based on underpowered studies or inappropriate methods, and hence their underlying mechanisms are still under debate. Here, we used 6100 genome-wide single nucleotide polymorphisms (SNPs) to test for general and local effect HFCs in maritime pine (Pinus pinaster Ait.), an iconic Mediterranean forest tree. Survival was used as a fitness proxy, and HFCs were assessed at a four-site common garden under contrasting environmental conditions (total of 16 288 trees). We found no significant correlations between genome-wide heterozygosity and fitness at any location, despite variation in inbreeding explaining a substantial proportion of the total variance for survival. However, four SNPs (including two non-synonymous mutations) were involved in significant associations with survival, in particular in the common gardens with higher environmental stress, as shown by a novel heterozygosity–fitness association test at the species-wide level. Fitness effects of SNPs involved in significant HFCs were stable across maritime pine gene pools naturally growing in distinct environments. These results led us to dismiss the general effect hypothesis and suggested a significant role of heterozygosity in specific candidate genes for increasing fitness in maritime pine. Our study highlights the importance of considering the species evolutionary and demographic history and different spatial scales and testing environments when assessing and interpreting HFCs. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ CNR ExploRAarrow_drop_down
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    CNR ExploRA
    Article . 2015
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    Europe PubMed Central
    Other literature type . 2015
    Data sources: PubMed Central
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    Oskar Bordeaux
    Article . 2015
    Data sources: Oskar Bordeaux
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    Authors: Alekseenko, E.; Thouvenin, B.; Tronczyński, J.; Carlotti, F; +3 Authors

    3D coupled modeling approach is used for the PCB dispersion assessment in the Gulf of Lion and its transfer to zooplankton via biogeochemical processes. PCB budgets and fluxes between the different species of PCB: dissolved , particulate, biosorbed on plankton, assimilated by zooplankton, which are governed by different processes: adsorption/desorption, bacteria and plankton mortality, zooplankton excretion, grazing, mineralization, volatilization have been estimated. Model outputs were compared with the available in situ data. It was found that the Rhone River outflows play an important role in the organism contamination in the coastal zone, whereas the atmospheric depositions are rather more important in the offshore zones. The transfer of the available contaminant to bacteria and phytoplankton species is mainly related to the biomass present in the water column. Absorption fluxes (grazing) to zooplankton are rather higher than the passive sorption fluxes, which are themselves also linked to the sorption coefficient. International audience

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mémoires en Sciences...arrow_drop_down
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Marine Pollution Bulletin
    Article . 2018 . Peer-reviewed
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    Other literature type . Conference object . 2017
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    Authors: Francis Bernardeau; Takahiro Nishimichi; Atsushi Taruya;

    An explicit full nulling scheme for cosmic shear observations is presented. It makes possible the construction of shear maps from extended source distributions for which the lens distance distribution is restricted to a definite interval. Such a construction allows to build totally independent shear maps, at all scales, that can be taken advantage of to constrain background cosmological parameters and systematics using the full statistical power of cosmic shear observations. Another advantage of such construction is that, as the lens redshift distribution can be made arbitrarily narrow, scale mixing due to projection effects can be limited allowing controlled predictions on the large scale shear power spectrum from perturbation theory calculations. Comment: 13 pages, 17 figures, accepted for publication in MNRAS

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ arXiv.org e-Print Ar...arrow_drop_down
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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2013
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    https://doi.org/10.48550/arxiv...
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    Monthly Notices of the Royal Astronomical Society
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      https://doi.org/10.48550/arxiv...
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    Authors: Nouguier, Frederic; Guérin, Charles-Antoine; Soriano, Gabriel;

    This paper is the first in a series of two papers on the use of combined improved hydrodynamic and electromagnetic analytical models for the simulation of the ocean Doppler spectrum at microwave frequencies. Under a linear assumption for the sea surface, we derive statistical expression for the main Doppler characteristics according to asymptotic scattering models. We consider classical models such as the Kirchhoff approximation and the two-scale model, as well as the more recent weighted curvature approximation (WCA). We recover two salient features of Doppler signature in the microwave regime. First, the Doppler characteristics are very sensitive to polarization, with higher mean Doppler shift in horizontal polarization. This is correctly rendered by the WCA but not the classical models. Second, the first two moments of the Doppler spectrum exhibit a nontrivial dependence on incidence angle. Results compare favorably with rigorous numerical computations for 1-D surfaces published in the literature. The simplicity and accuracy of the analytical models provide a valuable tool for the Doppler analysis of 2-D sea surfaces.

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    IEEE Transactions on Geoscience and Remote Sensing
    Article . 2011 . Peer-reviewed
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    Authors: Duvat, Virginie; Magnan, Alexandre K.; Canavesio, Rémy;

    This paper defends the interest of addressing a territory’s resilience based on the reconstruction of “chains of impacts” of past catastrophic events. The concept of “chain of impacts”, which had been proposed to the French Ministry of Ecology to be included in the national strategy on adaptation to climate change [ONERC, 2012], has been applied to tropical cyclones that hit the Tuamotu atolls (French Polynesia) in the framework of the RDT research project Réomers (2013-2016). The results highlight: (1) The intensity and high variability of tropical cyclones impacts, from which key lessons can be learnt to strengthen resilience. (2) The crucial role of the lessons learnt from past events in the reduction of these atolls’ vulnerability based on prevention enhancement and vital resources securing, in particular. (3) The barriers to risk reduction and adaptation to climate change (archipelagic structure of the Tuamotu, stakeholders’ conflicts and lack of financial means). (4) The complex and intertwined processes, both physical (sediment supply allowing island upward growth) and socio-economic (increase in agriculture productivity and improvement of living conditions), through which past cyclones have contributed to the strengthening of atoll resilience, which emphasize the need for atoll-specific and integrated adaptation to climate change strategies. (5) The new forms of vulnerability that were generated by the processes driving resilience, which increased atolls dependency towards Tahiti concerning food supply (increase in food imports and relating dependency on cash work, and induced health problems). Importantly, the method used to reconstruct chains of impacts: (i) is applicable to any type of territory and event; (ii) allows identify levers to reduce current risks; (iii) addresses the adaptation to climate change challenges. Cet article démontre l’intérêt d’une approche de la résilience des territoires par la reconstruction de « chaînes d’impacts » d’événements passés. Proposé au Ministère de l’Ecologie comme composante du référentiel national d’adaptation au changement climatique [ONERC, 2012], ce concept a fait l’objet d’applications à des cyclones tropicaux ayant touché les atolls des Tuamotu (Polynésie française) dans le cadre du projet RDT Réomers (2013-2016). Les résultats révèlent : (1) L’ampleur et la variabilité des impacts des cyclones, riches d’enseignements pour renforcer la résilience. (2) Le rôle crucial des retours d’expérience passés dans la réduction de la vulnérabilité, à travers le renforcement de la prévention et la sécurisation des ressources vitales. (3) Les barrières à la réduction des risques et à l’adaptation (éclatement territorial, conflits d’acteurs et manque de moyens financiers mobilisables, notamment). (4) Les mécanismes complexes, tant physiques (exhaussement des îles) que socio-économiques (amélioration de la productivité agricole et des conditions de vie), par lesquels les cyclones passés ont contribué à construire la résilience, et qui impliquent de penser des politiques d’adaptation spécifiques et intégrées. (5) L’émergence de nouvelles formes de vulnérabilité, dues à une augmentation de la dépendance des atolls vis-à-vis de Tahiti (importations alimentaires et dépendance associée aux emplois rémunérés, problèmes de santé publique). La méthode utilisée est (i) applicable à tout territoire et à toute perturbation ; (ii) permet d’identifier des leviers pour réduire les risques actuels ; (iii) répond aux enjeux de l’adaptation au changement climatique.

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    La Houille Blanche
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    La Houille Blanche
    Article . 2018 . Peer-reviewed
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    Authors: Pisapia, C.; Gérard, E.; Gérard, M.; Lecourt, L.; +9 Authors

    Despite their potential importance as analogs of primitive microbial metabolisms, the knowledge of the structure and functioning of the deep ecosystems associated with serpentinizing environments is hampered by the lack of accessibility to relevant systems. These hyperalkaline environments are depleted in dissolved inorganic carbon (DIC), making the carbon sources and assimilation pathways in the associated ecosystems highly enigmatic. The Prony Bay Hydrothermal Field (PHF) is an active serpentinization site where, similar to Lost City (Mid-Atlantic Ridge), high-pH fluids rich in H 2 and CH 4 are discharged from carbonate chimneys at the seafloor, but in a shallower lagoonal environment. This study aimed to characterize the subsurface microbial ecology of this environment by focusing on the earliest stages of chimney construction, dominated by the discharge of hydrothermal fluids of subseafloor origin. By jointly examining the mineralogy and the microbial diversity of the conduits of juvenile edifices at the micrometric scale, we find a central role of uncultivated bacteria belonging to the Firmicutes in the ecology of the PHF. These bacteria, along with members of the phyla Acetothermia and Omnitrophica, are identified as the first chimneys inhabitants before archaeal Methanosarcinales. They are involved in the construction and early consolidation of the carbonate structures via organomineralization processes. International audience

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    Frontiers in Microbiology
    Article . 2017 . Peer-reviewed
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    Horizon / Pleins textes
    Other literature type . 2017
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    Frontiers in Microbiology
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    Authors: de La Rosa, Hector; Cros, Anne; Cruz, Raul; Le Bars, Michael; +1 Authors

    Abstract Oceanic vortices play an important role in the redistribution of heat, salt and momentum in the oceans. Among these vortices, floating lenses or rings are often met in the meanders of warm currents. In order to better describe these vortices, we propose here a laboratory study of floating anticyclonic lenses. A small volume of fresh water is gently injected near the surface of a rotating layer of homogeneous salted water. Because of the opposite effects of rotation that tends to generate columnar structures and density stratification that spreads light water on the surface, the vortices take after a rapid transient, a quasi-stationary lenticular, finite-sized three dimensional typical shape given by the hydrostatic and geostrophic balances. Visualization and measurements of this equilibrium shape, aspect ratios and vorticity fields are performed. These measurements permit to compare our laboratory anticyclones to analytical predictions that use first a simple solid body rotation model and then a more realistic isolated Gaussian vorticity field. Finally, a comparison of our models with oceanographic lenses described in the literature is discussed.

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    European Journal of Mechanics - B/Fluids
    Article . 2017 . Peer-reviewed
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